Publications

Full and up-to-date list also available on Google Scholar.

  1. Weller B., Lin C.W., Rothballer S., Calderwood M.A., Falter-Braun P., Falter C. NeuroViOme: a viral orfeome collection for studies of neurodegenerative disease. Journal of NeuroVirology. 2026.
  2. Young V., Dohai B., ..., Lin C.W., et al. Effector–host interactome map links type III secretion systems in healthy gut microbiomes to immune modulation. Nature Microbiology. 2026.
  3. Pandiarajan R., Lin C.W., Sauer M., Rothballer S.T., Marin-de la Rosa N., Schwehn P., Papadopoulou E., Mairhörmann B., Falter-Braun P. Comparative gene regulatory network mapping of Brassicaceae members with differential drought tolerance. bioRxiv (preprint). 2025.
  4. Weller B., Lin C.W., Pogoutse O., Sauer M., Marin-de la Rosa N., Strobel A., Young V., Knapp J.J., Rayhan A., Falter C., et al. A resource of human coronavirus protein-coding sequences in a flexible, multipurpose Gateway Entry clone collection. G3: Genes, Genomes, Genetics. 2023.
  5. Kim D.K., Weller B., Lin C.W., Sheykhkarimli D., Knapp J.J., Dugied G., Zanzoni A., Pons C., Tofaute M.J., Maseko S.B., et al. A proteome-scale map of the SARS-CoV-2–human contactome. Nature Biotechnology. 2023. (co-first author)
  6. Young V., Dohai B., Hitch T.C.A., Hyden P., Weller B., van Heusden N.S., Saha D., Macgregor J.F., Maseko S.B., Lin C.W., et al. A gut meta-interactome map reveals modulation of human immunity by microbiome effectors. bioRxiv (preprint). 2023.
  7. Kim D.K., Weller B., Lin C.W., Sheykhkarimli D., Knapp J., Kishore N., Sauer M., Rayhan A., Young V., Marin-de la Rosa N., et al. A map of binary SARS-CoV-2 protein interactions implicates host immune regulation and ubiquitination. 2021.
  8. Kim D.K., Weller B., Lin C.W., Sheykhkarimli D., Knapp J.J., Kishore N., Sauer M., Rayhan A., Young V., Marin-de la Rosa N., et al. A map of direct SARS-CoV-2 protein interactions implicates specific human host processes. bioRxiv (preprint). 2021.
  9. Altmann M., Altmann S., Rodriguez P.A., Weller B., Elorduy Vergara L., Palme J., Marín-De la Rosa N., Sauer M., Wenig M., Villaécija-Aguilar J.A., et al. (incl. Lin C.W.) Extensive signal integration by the phytohormone protein network. Nature. 2020.
  10. Lin C.W., Fu S.F., Liu Y.J., Chen C.C., Chang C.H., Yang Y.W., Huang H.J. Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation. BMC Plant Biology. 2019.
  11. Marín-de la Rosa N., Lin C.W., Kang Y.J., Dhondt S., Gonzalez N., Inzé D., Falter-Braun P. Drought resistance is mediated by divergent strategies in closely related Brassicaceae. New Phytologist. 2019. (co-first author)
  12. Huang L.Y., Lin C.W., Lee R.H., Chiang C.Y., Wang Y.C., Chang C.H., Huang H.J. Integrating early transcriptomic responses to rhizotoxins in rice (Oryza sativa L.) reveals key regulators and a potential early biomarker of cadmium toxicity. Frontiers in Plant Science. 2017.
  13. Lin C.W., Huang L.Y., Huang C.L., Wang Y.C., Lai P.H., Wang H.V., Chang W.C., Chiang T.Y., Huang H.J. Common stress transcriptome analysis reveals functional and genomic architecture differences between early and delayed response genes. Plant and Cell Physiology. 2017. (co-first author)
  14. Lin C.Y., Trinh N.N., Lin C.W., Huang H.J. Transcriptome analysis of phytohormone, transporters and signaling pathways in response to vanadium stress in rice roots. Plant Physiology and Biochemistry. 2013.
  15. Lin C.Y., Trinh N.N., Fu S.F., Hsiung Y.C., Chia L.C., Lin C.W., Huang H.J. Comparison of early transcriptome responses to copper and cadmium in rice roots. Plant Molecular Biology. 2013.
  16. Fu S.F., Lin C.W., Kao T.W., Huang D.D., Huang H.J. PaPTP1, a gene encoding protein tyrosine phosphatase from orchid, Phalaenopsis amabilis, is regulated during floral development and induced by wounding. Plant Molecular Biology Reporter. 2011.
  17. Lin C.W., Lin C.Y., Chang C.C., Lee R.H., Tsai T.M., Chen P.Y., Chi W.C., Huang H.J. Early signalling pathways in rice roots under vanadate stress. Plant Physiology and Biochemistry. 2009.
  18. Chang H.B., Lin C.W., Huang H.J. Zinc-induced cell death in rice (Oryza sativa L.) roots. Plant Growth Regulation. 2005.
  19. Lin C.W., Chang H.B., Huang H.J. Zinc induces mitogen-activated protein kinase activation mediated by reactive oxygen species in rice roots. Plant Physiology and Biochemistry. 2005.